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rs586728824 SNP Detail
Summary
  • ID
    rs586728824
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr1:170901863 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTGAG AGTTCATCAG GTGATGGCAG
    G
    AGACAGGGCA TGGGTGGTTC AGTGG                                      
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
BALB/cByJ
C57BL/6J
C57BL/10J
C57BR/cdJ
C57L/J
C58/J
CE/J
LEWES/EiJ
NON/ShiLtJ
NZW/LacJ
PL/J
QSi5/Ianm
SEA/GnJ
SJL/J
ZALENDE/EiJ
ss915123932 MGP_WTSI_1_171074294 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
BALB/cByJ
C57BL/6J
C57BL/10J
C57BR/cdJ
C57L/J
C58/J
CE/J
LEWES/EiJ
NON/ShiLtJ
NZW/LacJ
PL/J
QSi5/Ianm
SEA/GnJ
SJL/J
ZALENDE/EiJ
rs586728824 SNP G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss915123932 MGP_WTSI_1_171074294 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:170901863 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
n-TDgtc7 nuclear encoded tRNA aspartic acid 7 (anticodon GTC) 1230 bp upstream
n-TGgcc13 nuclear encoded tRNA glycine 13 (anticodon GCC) 8 bp upstream
n-TGtcc5 nuclear encoded tRNA glycine 5 (anticodon TCC) 1889 bp upstream
n-TLcag7 nuclear encoded tRNA leucine 7 (anticodon CAG) 593 bp downstream
Rr423203 regulatory region 423203 1605 bp distal
Rr423204 regulatory region 423204 1794 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory