rs586739758 SNP Detail

Summary

• ID
  rs586739758
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45316262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT GTATGTATGT ATGTATGTAT
  S
  TATCTATCTA TCTATCTATC TATCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	I/LnJ	MA/MyJ	NZB/BlNJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss925375052	MGP_WTSI_9_45404964_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	G	C	C	C	C	C	C	C	G	G	C	G	G	C	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	I/LnJ	MA/MyJ	NZB/BlNJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs586739758					SNP	G	C	G	C	C	C	C	C	C	C	G	G	C	G	G	C	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925375052	MGP_WTSI_9_45404964_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45316262 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	445 bp proximal
Rr677906	regulatory region 677906	782 bp proximal
Tssr84785	transcription start site region 84785	1806 bp downstream
Tssr84786	transcription start site region 84786	1775 bp downstream
Tssr84787	transcription start site region 84787	1754 bp downstream
Tssr84788	transcription start site region 84788	1723 bp downstream
Tssr84789	transcription start site region 84789	1696 bp downstream
Tssr84790	transcription start site region 84790	971 bp upstream
Tssr84791	transcription start site region 84791	1102 bp upstream
Tssr84792	transcription start site region 84792	1150 bp upstream