rs586746666 SNP Detail

Summary

• ID
  rs586746666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174189572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGG GGCCCAACAT ATGATTGGGT
  R
  TGAGAAACGG GACATATGGG GAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	KK/HlJ	NZB/BlNJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss925277643	MGP_WTSI_2_174347779_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	KK/HlJ	NZB/BlNJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs586746666					SNP	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925277643	MGP_WTSI_2_174347779_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174189572 () rs orientation: forward

Symbol	Name	Function Class
Gnas	GNAS complex locus	1035 bp downstream
Rr572113	regulatory region 572113	within coordinates
Tssr792	transcription start site region 792	1429 bp downstream
Tssr22139	transcription start site region 22139	1746 bp downstream
Tssr22140	transcription start site region 22140	1465 bp downstream
Tssr22141	transcription start site region 22141	1446 bp downstream
Tssr22142	transcription start site region 22142	1409 bp downstream
Tssr22143	transcription start site region 22143	1264 bp downstream
Tssr22144	transcription start site region 22144	1199 bp downstream
Tssr22145	transcription start site region 22145	1178 bp downstream
Tssr22146	transcription start site region 22146	1141 bp downstream