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rs586747391 SNP Detail
Summary
  • ID
    rs586747391
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93353926 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GAAGA GCAGCTGAGG CGCCAGGAAC
K
TGACAGAAAA TTCCGTGAGG AACAA                                      

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss916289617 MGP_WTSI_3_93446619 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586747391 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss916289617 MGP_WTSI_3_93446619 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93353926 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 1825 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr962 transcription start site region 962 1493 bp downstream
Tssr963 transcription start site region 963 1457 bp downstream
Tssr964 transcription start site region 964 1358 bp downstream
Tssr30367 transcription start site region 30367 1978 bp downstream
Tssr30368 transcription start site region 30368 1954 bp downstream
Tssr30369 transcription start site region 30369 1950 bp downstream
Tssr30370 transcription start site region 30370 1941 bp downstream
Tssr30371 transcription start site region 30371 1914 bp downstream
Tssr30372 transcription start site region 30372 1904 bp downstream
Tssr30373 transcription start site region 30373 1851 bp downstream
Tssr30374 transcription start site region 30374 1837 bp downstream
Tssr30375 transcription start site region 30375 1824 bp downstream
Tssr30376 transcription start site region 30376 1788 bp downstream
Tssr30377 transcription start site region 30377 1762 bp downstream
Tssr30378 transcription start site region 30378 1740 bp downstream
Tssr30379 transcription start site region 30379 1723 bp downstream
Tssr30380 transcription start site region 30380 1644 bp downstream
Tssr30381 transcription start site region 30381 1627 bp downstream
Tssr30382 transcription start site region 30382 1572 bp downstream
Tssr30383 transcription start site region 30383 1561 bp downstream
Tssr30384 transcription start site region 30384 1552 bp downstream
Tssr30385 transcription start site region 30385 1527 bp downstream
Tssr30386 transcription start site region 30386 1505 bp downstream
Tssr30387 transcription start site region 30387 1411 bp downstream
Tssr30388 transcription start site region 30388 1392 bp downstream
Tssr30389 transcription start site region 30389 1370 bp downstream
Tssr30390 transcription start site region 30390 1299 bp downstream
Tssr30391 transcription start site region 30391 1289 bp downstream
Tssr30392 transcription start site region 30392 1271 bp downstream
Tssr30393 transcription start site region 30393 1260 bp downstream
Tssr30394 transcription start site region 30394 1234 bp downstream
Tssr30395 transcription start site region 30395 1207 bp downstream
Tssr30396 transcription start site region 30396 1157 bp downstream
Tssr30397 transcription start site region 30397 1141 bp downstream
Tssr30398 transcription start site region 30398 1063 bp downstream
Tssr30399 transcription start site region 30399 984 bp downstream
Tssr30400 transcription start site region 30400 535 bp downstream
Tssr30401 transcription start site region 30401 514 bp downstream
Tssr30402 transcription start site region 30402 414 bp downstream
Tssr30403 transcription start site region 30403 377 bp downstream
Tssr30404 transcription start site region 30404 754 bp upstream
Tssr30405 transcription start site region 30405 865 bp upstream
Tssr30406 transcription start site region 30406 1013 bp upstream
Tssr30407 transcription start site region 30407 1208 bp upstream
Tssr34356 transcription start site region 34356 1900 bp upstream
Tssr34357 transcription start site region 34357 1835 bp upstream
Tssr34358 transcription start site region 34358 1776 bp upstream
Tssr34359 transcription start site region 34359 1701 bp upstream
Tssr34360 transcription start site region 34360 1656 bp upstream
Tssr34361 transcription start site region 34361 1599 bp upstream
Tssr34362 transcription start site region 34362 1586 bp upstream
Tssr34363 transcription start site region 34363 1561 bp upstream
Tssr34364 transcription start site region 34364 1546 bp upstream
Tssr34365 transcription start site region 34365 1520 bp upstream
Tssr34366 transcription start site region 34366 1452 bp upstream
Tssr34367 transcription start site region 34367 1287 bp upstream
Tssr34368 transcription start site region 34368 1257 bp upstream
Tssr34369 transcription start site region 34369 1231 bp upstream
Tssr34370 transcription start site region 34370 1205 bp upstream
Tssr34371 transcription start site region 34371 1062 bp upstream
Tssr34372 transcription start site region 34372 401 bp upstream
Tssr34373 transcription start site region 34373 757 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory