rs586768595 SNP Detail

Summary

• ID
  rs586768595
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88824636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG CTGATTGGTT GTGGCGGGGG
  T
  GGGGTTAGGA GGCATCTCTG TGACT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BTBR T<+> Itpr3/J	C57BL/6J	C57BR/cdJ	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	RIIIS/J	SM/J	ZALENDE/EiJ
ss917551555	MGP_WTSI_5_88676777	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BTBR T<+> Itpr3/J	C57BL/6J	C57BR/cdJ	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	RIIIS/J	SM/J	ZALENDE/EiJ
rs586768595					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917551555	MGP_WTSI_5_88676777	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88824636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16030	CpG island 16030	287 bp distal
Gm71600	predicted gene, 71600	within coordinates
Grsf1	G-rich RNA sequence binding factor 1	606 bp upstream
Rr378262	regulatory region 378262	1161 bp upstream
Rr614150	regulatory region 614150	1122 bp distal
Rr614151	regulatory region 614151	621 bp distal
Rr614152	regulatory region 614152	799 bp distal
Rr614153	regulatory region 614153	738 bp distal
Rr614154	regulatory region 614154	544 bp distal
Rr614155	regulatory region 614155	within coordinates
Tssr51689	transcription start site region 51689	1550 bp upstream
Tssr51690	transcription start site region 51690	1214 bp upstream
Tssr51691	transcription start site region 51691	1185 bp upstream
Tssr51692	transcription start site region 51692	1122 bp upstream
Tssr51693	transcription start site region 51693	648 bp upstream
Tssr51694	transcription start site region 51694	591 bp upstream
Tssr51695	transcription start site region 51695	568 bp upstream
Tssr51696	transcription start site region 51696	540 bp upstream