rs586850918 SNP Detail

Summary

• ID
  rs586850918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAT CAGTGGTTGT GATTTCTACA
  R
  TGGTGGTGAC TTCAGCAGTG GTGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
ss917727696	MGP_WTSI_5_137149808	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
rs586850918					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727696	MGP_WTSI_5_137149808	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178656 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	540 bp upstream
Tssr1678	transcription start site region 1678	676 bp downstream
Tssr1679	transcription start site region 1679	1619 bp downstream
Tssr1680	transcription start site region 1680	1639 bp upstream
Tssr1681	transcription start site region 1681	1662 bp downstream
Tssr1682	transcription start site region 1682	1679 bp downstream
Tssr1683	transcription start site region 1683	1768 bp downstream
Tssr1684	transcription start site region 1684	1784 bp downstream
Tssr1685	transcription start site region 1685	1798 bp upstream
Tssr1686	transcription start site region 1686	1825 bp downstream
Tssr1687	transcription start site region 1687	1876 bp downstream
Tssr1688	transcription start site region 1688	1900 bp downstream
Tssr1689	transcription start site region 1689	1919 bp upstream
Tssr49309	transcription start site region 49309	7 bp downstream
Tssr49310	transcription start site region 49310	330 bp upstream
Tssr49311	transcription start site region 49311	344 bp upstream
Tssr49312	transcription start site region 49312	724 bp upstream
Tssr49313	transcription start site region 49313	972 bp upstream
Tssr49314	transcription start site region 49314	1243 bp upstream
Tssr49315	transcription start site region 49315	1259 bp upstream
Tssr53919	transcription start site region 53919	160 bp upstream
Tssr53920	transcription start site region 53920	125 bp upstream
Tssr53921	transcription start site region 53921	1 bp downstream
Tssr53922	transcription start site region 53922	42 bp downstream
Tssr53923	transcription start site region 53923	83 bp downstream
Tssr53924	transcription start site region 53924	97 bp downstream
Tssr53925	transcription start site region 53925	135 bp downstream
Tssr53926	transcription start site region 53926	166 bp downstream
Tssr53927	transcription start site region 53927	315 bp downstream
Tssr53928	transcription start site region 53928	333 bp downstream
Tssr53929	transcription start site region 53929	370 bp downstream
Tssr53930	transcription start site region 53930	435 bp downstream
Tssr53931	transcription start site region 53931	460 bp downstream
Tssr53932	transcription start site region 53932	476 bp downstream
Tssr53933	transcription start site region 53933	514 bp downstream
Tssr53934	transcription start site region 53934	546 bp downstream
Tssr53935	transcription start site region 53935	597 bp downstream
Tssr53936	transcription start site region 53936	618 bp downstream
Tssr53937	transcription start site region 53937	708 bp downstream
Tssr53938	transcription start site region 53938	744 bp downstream
Tssr53939	transcription start site region 53939	798 bp downstream
Tssr53940	transcription start site region 53940	974 bp downstream
Tssr53941	transcription start site region 53941	1014 bp downstream
Tssr53942	transcription start site region 53942	1073 bp downstream
Tssr53943	transcription start site region 53943	1238 bp downstream
Tssr53944	transcription start site region 53944	1287 bp downstream
Tssr53945	transcription start site region 53945	1297 bp downstream
Tssr53946	transcription start site region 53946	1318 bp downstream
Tssr53947	transcription start site region 53947	1426 bp downstream