rs586866929 SNP Detail

Summary

• ID
  rs586866929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148417524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG AGAGACAGAG AGAGAGAGAG
  R
  GAGAGAGAGA GAGAGAGAGA GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NZO/HlLtJ	PL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss917141131	MGP_WTSI_4_148333067	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NZO/HlLtJ	PL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs586866929					SNP	G	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917141131	MGP_WTSI_4_148333067	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148417524 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	383 bp upstream
Tssr40269	transcription start site region 40269	756 bp downstream
Tssr40270	transcription start site region 40270	412 bp upstream