rs586880646 SNP Detail

Summary

• ID
  rs586880646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112262552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT GTGTGTGTGT GCGCGCGCGC
  R
  CGTGTGTGTG TGTGTGTGTG TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918295807	MGP_WTSI_6_112285591	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	A	A	A	A	A	A	A	G	G	G	A	A	G	A	A	A	A	G	G	G	A	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586880646					SNP	A	A	A	G	A	A	A	A	A	A	A	A	G	G	G	A	A	G	A	A	A	A	G	G	G	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918295807	MGP_WTSI_6_112285591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112262552 () rs orientation: forward

Symbol	Name	Function Class
5031434C07Rik	RIKEN cDNA 5031434C07 gene	2 bp downstream
Lmcd1	LIM and cysteine-rich domains 1	within coordinates