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rs586957864 SNP Detail
Summary
  • ID
    rs586957864
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:54798914 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTGAG GGCAAACAGA AGCCTAAGGG
Y
CAAAGCCTGA TGGCCCAAGG GCAAA                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss920900478 MGP_WTSI_11_54908088 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586957864 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss920900478 MGP_WTSI_11_54908088 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:54798914 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gpx3 glutathione peroxidase 3 within coordinates
Rr447428 regulatory region 447428 1765 bp distal
Rr447429 regulatory region 447429 1182 bp distal
Tssr3502 transcription start site region 3502 1553 bp downstream
Tssr101551 transcription start site region 101551 1823 bp downstream
Tssr101552 transcription start site region 101552 1760 bp downstream
Tssr101553 transcription start site region 101553 1307 bp downstream
Tssr101554 transcription start site region 101554 1295 bp downstream
Tssr101555 transcription start site region 101555 1253 bp downstream
Tssr101556 transcription start site region 101556 958 bp downstream
Tssr101557 transcription start site region 101557 928 bp downstream
Tssr101558 transcription start site region 101558 911 bp downstream
Tssr101559 transcription start site region 101559 888 bp downstream
Tssr101560 transcription start site region 101560 842 bp downstream
Tssr101561 transcription start site region 101561 447 bp upstream
Tssr101562 transcription start site region 101562 471 bp upstream
Tssr101563 transcription start site region 101563 521 bp upstream
Tssr101564 transcription start site region 101564 535 bp upstream
Tssr101565 transcription start site region 101565 964 bp upstream
Tssr101566 transcription start site region 101566 1014 bp upstream
Tssr101567 transcription start site region 101567 1375 bp upstream
Tssr101568 transcription start site region 101568 1451 bp upstream
Tssr101569 transcription start site region 101569 1534 bp upstream
Tssr101570 transcription start site region 101570 1556 bp upstream
Tssr101571 transcription start site region 101571 1610 bp upstream
Tssr101572 transcription start site region 101572 1705 bp upstream
Tssr101573 transcription start site region 101573 1742 bp upstream
Tssr101574 transcription start site region 101574 1756 bp upstream
Tssr101575 transcription start site region 101575 1804 bp upstream
Tssr101576 transcription start site region 101576 1818 bp upstream
Tssr101577 transcription start site region 101577 1847 bp upstream
Tssr101578 transcription start site region 101578 1930 bp upstream
Tssr108006 transcription start site region 108006 803 bp upstream
Tssr108007 transcription start site region 108007 476 bp downstream
Tssr108008 transcription start site region 108008 536 bp downstream
Tssr108009 transcription start site region 108009 552 bp downstream
Tssr108010 transcription start site region 108010 973 bp downstream
Tssr108011 transcription start site region 108011 1569 bp downstream
Tssr108012 transcription start site region 108012 1603 bp downstream
Tssr108013 transcription start site region 108013 1697 bp downstream
Tssr108014 transcription start site region 108014 1704 bp downstream
Tssr108015 transcription start site region 108015 1787 bp downstream
Tssr108016 transcription start site region 108016 1839 bp downstream
Tssr108017 transcription start site region 108017 1890 bp downstream
Tssr108018 transcription start site region 108018 1905 bp downstream
Tssr108019 transcription start site region 108019 1941 bp downstream
Tssr108020 transcription start site region 108020 1997 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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