rs587083657 SNP Detail

Summary

• ID
  rs587083657
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61213812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCG CACAGTAGGA CTGCGCAGGC
  T
  GTCACTGCAT ACAGGAGCGC ACCGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss924355647	MGP_WTSI_19_61225374	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs587083657					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924355647	MGP_WTSI_19_61225374	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61213812 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11146	CpG island 11146			within coordinates
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm56644	predicted gene, 56644			within coordinates
Rr406075	regulatory region 406075			793 bp downstream
Rr406076	regulatory region 406076			558 bp upstream
Rr406077	regulatory region 406077			1852 bp upstream
Rr550838	regulatory region 550838			1182 bp distal
Rr550839	regulatory region 550839			1233 bp distal
Rr550840	regulatory region 550840			1464 bp proximal
Rr550841	regulatory region 550841			1992 bp proximal
Tssr157374	transcription start site region 157374			934 bp downstream
Tssr157375	transcription start site region 157375			891 bp downstream
Tssr157376	transcription start site region 157376			829 bp downstream
Tssr157377	transcription start site region 157377			764 bp downstream
Tssr157378	transcription start site region 157378			690 bp downstream
Tssr157379	transcription start site region 157379			612 bp downstream
Tssr160090	transcription start site region 160090			768 bp upstream
Tssr160091	transcription start site region 160091			744 bp upstream
Tssr160092	transcription start site region 160092			620 bp upstream
Tssr160093	transcription start site region 160093			525 bp upstream
Tssr160094	transcription start site region 160094			463 bp upstream
Tssr160095	transcription start site region 160095			376 bp upstream
Tssr160096	transcription start site region 160096			34 bp downstream
Tssr160097	transcription start site region 160097			225 bp downstream
Tssr160098	transcription start site region 160098			702 bp downstream
Tssr160099	transcription start site region 160099			910 bp downstream
Tssr160100	transcription start site region 160100			963 bp downstream
Tssr160101	transcription start site region 160101			1276 bp downstream
Tssr160102	transcription start site region 160102			1819 bp downstream
Tssr160103	transcription start site region 160103			1931 bp downstream