rs587124757 SNP Detail

Summary

• ID
  rs587124757
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127869701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA AGAAGAAGAA GAAGAAGAAG
  R
  AGAAGGAGAA GGAGAAGGAG AAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ
ss920683135	MGP_WTSI_10_128033832	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ
rs587124757					SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920683135	MGP_WTSI_10_128033832	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127869701 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	1436 bp proximal
Gm66417	predicted gene, 66417	within coordinates
Gm66418	predicted gene, 66418	within coordinates
Naca	nascent polypeptide-associated complex alpha polypeptide	1743 bp upstream
Rr224438	regulatory region 224438	899 bp proximal
Rr385474	regulatory region 385474	981 bp upstream
Tssr96285	transcription start site region 96285	562 bp downstream
Tssr96286	transcription start site region 96286	480 bp downstream
Tssr96287	transcription start site region 96287	224 bp downstream
Tssr96288	transcription start site region 96288	157 bp downstream
Tssr96289	transcription start site region 96289	138 bp downstream
Tssr96290	transcription start site region 96290	1498 bp upstream
Tssr96291	transcription start site region 96291	1507 bp upstream
Tssr96292	transcription start site region 96292	1531 bp upstream
Tssr96293	transcription start site region 96293	1648 bp upstream
Tssr96294	transcription start site region 96294	1755 bp upstream
Tssr96295	transcription start site region 96295	1772 bp upstream
Tssr96296	transcription start site region 96296	1793 bp upstream
Tssr96297	transcription start site region 96297	1805 bp upstream