rs587133513 SNP Detail

Summary

• ID
  rs587133513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154721944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCC GCCCGCCGCC CCCCGCGGGC
  Y
  TCCCGCCCCC GCCCCTCCCC CCGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss917164709	MGP_WTSI_4_154637487	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs587133513					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917164709	MGP_WTSI_4_154637487	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154721944 () rs orientation: forward

Symbol	Name	Function Class
5930403L14Rik	RIKEN cDNA 5930403L14 gene	1120 bp upstream
Cpgi15444	CpG island 15444	within coordinates
Gm57100	predicted gene, 57100	64 bp downstream
Prdm16	PR domain containing 16	614 bp upstream
Prdm16os	Prdm16 opposite strand transcript	93 bp upstream
Rr100673	regulatory region 100673	within coordinates
Tssr1394	transcription start site region 1394	553 bp downstream
Tssr40591	transcription start site region 40591	339 bp downstream
Tssr40592	transcription start site region 40592	59 bp upstream
Tssr40593	transcription start site region 40593	82 bp upstream
Tssr44877	transcription start site region 44877	1352 bp upstream
Tssr44878	transcription start site region 44878	1272 bp upstream
Tssr44879	transcription start site region 44879	1249 bp upstream
Tssr44880	transcription start site region 44880	1130 bp upstream
Tssr44881	transcription start site region 44881	707 bp upstream
Tssr44882	transcription start site region 44882	665 bp upstream
Tssr44883	transcription start site region 44883	634 bp upstream
Tssr44884	transcription start site region 44884	501 bp upstream