rs587187993 SNP Detail

Summary

• ID
  rs587187993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC AGGGTTCTAC GCAGTCTAGC
  R
  AGCGATCAAA TCAAGCACGC ACCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915798489	MGP_WTSI_2_164333840	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs587187993					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915798489	MGP_WTSI_2_164333840	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175760 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	506 bp downstream
Tssr745	transcription start site region 745	463 bp downstream
Tssr746	transcription start site region 746	456 bp downstream
Tssr747	transcription start site region 747	443 bp upstream
Tssr748	transcription start site region 748	418 bp downstream
Tssr749	transcription start site region 749	381 bp downstream
Tssr750	transcription start site region 750	364 bp downstream
Tssr751	transcription start site region 751	312 bp downstream
Tssr752	transcription start site region 752	250 bp downstream
Tssr753	transcription start site region 753	240 bp downstream
Tssr754	transcription start site region 754	424 bp upstream
Tssr21562	transcription start site region 21562	1104 bp downstream
Tssr21563	transcription start site region 21563	1095 bp downstream
Tssr21564	transcription start site region 21564	1064 bp downstream
Tssr21565	transcription start site region 21565	1051 bp downstream
Tssr21566	transcription start site region 21566	1040 bp downstream
Tssr21567	transcription start site region 21567	1028 bp downstream
Tssr21568	transcription start site region 21568	1019 bp downstream
Tssr21569	transcription start site region 21569	514 bp downstream
Tssr21570	transcription start site region 21570	472 bp downstream
Tssr21571	transcription start site region 21571	444 bp downstream
Tssr21572	transcription start site region 21572	430 bp downstream
Tssr21573	transcription start site region 21573	399 bp downstream
Tssr21574	transcription start site region 21574	337 bp downstream
Tssr21575	transcription start site region 21575	436 bp upstream
Tssr21576	transcription start site region 21576	452 bp upstream
Tssr21577	transcription start site region 21577	471 bp upstream
Tssr27433	transcription start site region 27433	484 bp upstream
Tssr27434	transcription start site region 27434	454 bp upstream
Tssr27435	transcription start site region 27435	429 bp upstream
Tssr27436	transcription start site region 27436	412 bp upstream
Tssr27437	transcription start site region 27437	371 bp upstream
Tssr27438	transcription start site region 27438	354 bp upstream
Tssr27439	transcription start site region 27439	349 bp upstream
Tssr27440	transcription start site region 27440	333 bp upstream
Tssr27441	transcription start site region 27441	284 bp upstream
Tssr27442	transcription start site region 27442	274 bp upstream
Tssr27443	transcription start site region 27443	215 bp upstream
Tssr27444	transcription start site region 27444	204 bp upstream
Tssr27445	transcription start site region 27445	409 bp downstream
Tssr27446	transcription start site region 27446	453 bp downstream
Tssr27447	transcription start site region 27447	548 bp downstream
Tssr27448	transcription start site region 27448	1162 bp downstream