rs587190193 SNP Detail

Summary

• ID
  rs587190193
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125993241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC CTCCTCCTCC TCCTCCTCCT
  C
  CTCCTTCTTC TTCTTCTTCC TCTCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
ss915678309	MGP_WTSI_2_126151321	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
rs587190193					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915678309	MGP_WTSI_2_126151321	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125993241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	514 bp proximal
Dtwd1	DTW domain containing 1	820 bp upstream
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	656 bp upstream
Rr564315	regulatory region 564315	232 bp proximal
Rr564316	regulatory region 564316	673 bp proximal
Rr564317	regulatory region 564317	805 bp proximal
Rr564318	regulatory region 564318	831 bp proximal
Tssr19931	transcription start site region 19931	810 bp upstream
Tssr19932	transcription start site region 19932	844 bp upstream
Tssr26028	transcription start site region 26028	635 bp downstream
Tssr26029	transcription start site region 26029	647 bp downstream
Tssr26030	transcription start site region 26030	694 bp downstream