rs587216965 SNP Detail

Summary

• ID
  rs587216965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44216738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACA ACAAGCAAGC AAGCAAGCAA
  R
  CAAGCAAGCA AGCAAGCAAG CAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	LEWES/EiJ	MOLF/EiJ	PWK/PhJ	QSi3/Ianm
ss923151728	MGP_WTSI_16_44396375	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	LEWES/EiJ	MOLF/EiJ	PWK/PhJ	QSi3/Ianm
rs587216965					SNP	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923151728	MGP_WTSI_16_44396375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44216738 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	within coordinates
Rr391716	regulatory region 391716	1315 bp upstream
Rr516304	regulatory region 516304	1566 bp distal
Rr516305	regulatory region 516305	703 bp distal
Rr516306	regulatory region 516306	101 bp proximal
Rr516307	regulatory region 516307	748 bp proximal
Tssr138551	transcription start site region 138551	1571 bp downstream
Tssr138552	transcription start site region 138552	1549 bp downstream