rs587228850 SNP Detail

Summary

• ID
  rs587228850
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137179477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG ATATCACCAG TGTTTGTGAC
  A
  TCAGCAGTGG TGGTGACATC ACCAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
ss917727736	MGP_WTSI_5_137150629	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
rs587228850					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727736	MGP_WTSI_5_137150629	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137179477 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	1361 bp upstream
Tssr1678	transcription start site region 1678	136 bp upstream
Tssr1679	transcription start site region 1679	798 bp downstream
Tssr1680	transcription start site region 1680	818 bp upstream
Tssr1681	transcription start site region 1681	841 bp downstream
Tssr1682	transcription start site region 1682	858 bp downstream
Tssr1683	transcription start site region 1683	947 bp downstream
Tssr1684	transcription start site region 1684	963 bp downstream
Tssr1685	transcription start site region 1685	977 bp upstream
Tssr1686	transcription start site region 1686	1004 bp downstream
Tssr1687	transcription start site region 1687	1055 bp downstream
Tssr1688	transcription start site region 1688	1079 bp downstream
Tssr1689	transcription start site region 1689	1098 bp upstream
Tssr1690	transcription start site region 1690	1265 bp upstream
Tssr1691	transcription start site region 1691	1269 bp downstream
Tssr1692	transcription start site region 1692	1433 bp downstream
Tssr1693	transcription start site region 1693	1575 bp upstream
Tssr1694	transcription start site region 1694	1613 bp downstream
Tssr1695	transcription start site region 1695	1732 bp upstream
Tssr1696	transcription start site region 1696	1789 bp upstream
Tssr49309	transcription start site region 49309	828 bp downstream
Tssr49310	transcription start site region 49310	486 bp downstream
Tssr49311	transcription start site region 49311	462 bp downstream
Tssr49312	transcription start site region 49312	71 bp downstream
Tssr49313	transcription start site region 49313	151 bp upstream
Tssr49314	transcription start site region 49314	422 bp upstream
Tssr49315	transcription start site region 49315	438 bp upstream
Tssr49316	transcription start site region 49316	1354 bp upstream
Tssr49317	transcription start site region 49317	1624 bp upstream
Tssr49318	transcription start site region 49318	1806 bp upstream
Tssr53919	transcription start site region 53919	981 bp upstream
Tssr53920	transcription start site region 53920	946 bp upstream
Tssr53921	transcription start site region 53921	788 bp upstream
Tssr53922	transcription start site region 53922	772 bp upstream
Tssr53923	transcription start site region 53923	730 bp upstream
Tssr53924	transcription start site region 53924	711 bp upstream
Tssr53925	transcription start site region 53925	679 bp upstream
Tssr53926	transcription start site region 53926	645 bp upstream
Tssr53927	transcription start site region 53927	496 bp upstream
Tssr53928	transcription start site region 53928	483 bp upstream
Tssr53929	transcription start site region 53929	443 bp upstream
Tssr53930	transcription start site region 53930	372 bp upstream
Tssr53931	transcription start site region 53931	354 bp upstream
Tssr53932	transcription start site region 53932	336 bp upstream
Tssr53933	transcription start site region 53933	297 bp upstream
Tssr53934	transcription start site region 53934	264 bp upstream
Tssr53935	transcription start site region 53935	211 bp upstream
Tssr53936	transcription start site region 53936	188 bp upstream
Tssr53937	transcription start site region 53937	103 bp upstream
Tssr53938	transcription start site region 53938	62 bp upstream
Tssr53939	transcription start site region 53939	13 bp upstream
Tssr53940	transcription start site region 53940	153 bp downstream
Tssr53941	transcription start site region 53941	193 bp downstream
Tssr53942	transcription start site region 53942	252 bp downstream
Tssr53943	transcription start site region 53943	417 bp downstream
Tssr53944	transcription start site region 53944	466 bp downstream
Tssr53945	transcription start site region 53945	476 bp downstream
Tssr53946	transcription start site region 53946	497 bp downstream
Tssr53947	transcription start site region 53947	605 bp downstream
Tssr53948	transcription start site region 53948	1501 bp downstream
Tssr53949	transcription start site region 53949	1542 bp downstream
Tssr53950	transcription start site region 53950	1664 bp downstream
Tssr53951	transcription start site region 53951	1776 bp downstream
Tssr53952	transcription start site region 53952	1790 bp downstream
Tssr53953	transcription start site region 53953	1880 bp downstream