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rs587230273 SNP Detail
Summary
  • ID
    rs587230273
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr7:19429995 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CAGTG GTAGAGCCCC TGCCTAGAAT
C
CCCCAGTGAG GGGCTGTGGG CGTGG                                      

C = C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss918579991 MGP_WTSI_7_19696070 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs587230273 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss918579991 MGP_WTSI_7_19696070 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19429995 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E 39 bp downstream
Cpgi18507 CpG island 18507 451 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 1701 bp proximal
Gm71725 predicted gene, 71725 1048 bp upstream
Rr643239 regulatory region 643239 534 bp distal
Rr643240 regulatory region 643240 381 bp proximal
Rr643241 regulatory region 643241 566 bp proximal
Tssr2112 transcription start site region 2112 381 bp upstream
Tssr2113 transcription start site region 2113 406 bp upstream
Tssr2114 transcription start site region 2114 521 bp upstream
Tssr2115 transcription start site region 2115 557 bp upstream
Tssr2116 transcription start site region 2116 632 bp upstream
Tssr2117 transcription start site region 2117 654 bp upstream
Tssr2118 transcription start site region 2118 761 bp upstream
Tssr2119 transcription start site region 2119 770 bp downstream
Tssr2120 transcription start site region 2120 833 bp upstream
Tssr2121 transcription start site region 2121 865 bp upstream
Tssr2122 transcription start site region 2122 1585 bp downstream
Tssr64880 transcription start site region 64880 198 bp upstream
Tssr64881 transcription start site region 64881 250 bp upstream
Tssr64882 transcription start site region 64882 294 bp upstream
Tssr64883 transcription start site region 64883 332 bp upstream
Tssr64884 transcription start site region 64884 359 bp upstream
Tssr64885 transcription start site region 64885 438 bp upstream
Tssr64886 transcription start site region 64886 459 bp upstream
Tssr64887 transcription start site region 64887 491 bp upstream
Tssr64888 transcription start site region 64888 710 bp upstream
Tssr64889 transcription start site region 64889 804 bp upstream
Tssr64890 transcription start site region 64890 850 bp upstream
Tssr64891 transcription start site region 64891 873 bp upstream
Tssr64892 transcription start site region 64892 906 bp upstream
Tssr64893 transcription start site region 64893 941 bp upstream
Tssr64894 transcription start site region 64894 1395 bp upstream
Tssr64895 transcription start site region 64895 1491 bp upstream
Tssr64896 transcription start site region 64896 1517 bp upstream
Tssr70973 transcription start site region 70973 222 bp downstream
Tssr70974 transcription start site region 70974 268 bp downstream
Tssr70975 transcription start site region 70975 296 bp downstream
Tssr70976 transcription start site region 70976 331 bp downstream
Tssr70977 transcription start site region 70977 379 bp downstream
Tssr70978 transcription start site region 70978 394 bp downstream
Tssr70979 transcription start site region 70979 418 bp downstream
Tssr70980 transcription start site region 70980 428 bp downstream
Tssr70981 transcription start site region 70981 449 bp downstream
Tssr70982 transcription start site region 70982 463 bp downstream
Tssr70983 transcription start site region 70983 496 bp downstream
Tssr70984 transcription start site region 70984 513 bp downstream
Tssr70985 transcription start site region 70985 578 bp downstream
Tssr70986 transcription start site region 70986 611 bp downstream
Tssr70987 transcription start site region 70987 641 bp downstream
Tssr70988 transcription start site region 70988 685 bp downstream
Tssr70989 transcription start site region 70989 724 bp downstream
Tssr70990 transcription start site region 70990 736 bp downstream
Tssr70991 transcription start site region 70991 781 bp downstream
Tssr70992 transcription start site region 70992 789 bp downstream
Tssr70993 transcription start site region 70993 798 bp downstream
Tssr70994 transcription start site region 70994 839 bp downstream
Tssr70995 transcription start site region 70995 844 bp downstream
Tssr70996 transcription start site region 70996 877 bp downstream
Tssr70997 transcription start site region 70997 911 bp downstream
Tssr70998 transcription start site region 70998 973 bp downstream
Tssr70999 transcription start site region 70999 991 bp downstream
Tssr71000 transcription start site region 71000 1434 bp downstream
Tssr71001 transcription start site region 71001 1464 bp downstream
Tssr71002 transcription start site region 71002 1524 bp downstream
Tssr71003 transcription start site region 71003 1542 bp downstream
Tssr71004 transcription start site region 71004 1570 bp downstream
Tssr71005 transcription start site region 71005 1921 bp downstream
Tssr71006 transcription start site region 71006 1954 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory