rs587257263 SNP Detail

Summary

• ID
  rs587257263
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122826054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACC AACCAACCAA CCAACCAACC
  A
  ACCAACCAAC CAACACAAGA AGCCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918335632	MGP_WTSI_6_122849095	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs587257263					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918335632	MGP_WTSI_6_122849095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122826054 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	1119 bp downstream
Tssr58710	transcription start site region 58710	899 bp downstream
Tssr58711	transcription start site region 58711	1362 bp upstream
Tssr58712	transcription start site region 58712	1480 bp upstream
Tssr58713	transcription start site region 58713	1536 bp upstream
Tssr62966	transcription start site region 62966	1309 bp upstream
Tssr62967	transcription start site region 62967	1264 bp upstream
Tssr62968	transcription start site region 62968	1216 bp upstream
Tssr62969	transcription start site region 62969	896 bp upstream
Tssr62970	transcription start site region 62970	876 bp upstream
Tssr62971	transcription start site region 62971	816 bp upstream
Tssr62972	transcription start site region 62972	716 bp upstream
Tssr62973	transcription start site region 62973	655 bp upstream
Tssr62974	transcription start site region 62974	569 bp upstream
Tssr62975	transcription start site region 62975	484 bp upstream
Tssr62976	transcription start site region 62976	395 bp upstream
Tssr62977	transcription start site region 62977	337 bp upstream
Tssr62978	transcription start site region 62978	283 bp upstream
Tssr62979	transcription start site region 62979	250 bp upstream
Tssr62980	transcription start site region 62980	234 bp upstream
Tssr62981	transcription start site region 62981	215 bp upstream
Tssr62982	transcription start site region 62982	56 bp upstream
Tssr62983	transcription start site region 62983	391 bp downstream
Tssr62984	transcription start site region 62984	461 bp downstream
Tssr62985	transcription start site region 62985	504 bp downstream
Tssr62986	transcription start site region 62986	815 bp downstream
Tssr62987	transcription start site region 62987	945 bp downstream
Tssr62988	transcription start site region 62988	1013 bp downstream
Tssr62989	transcription start site region 62989	1172 bp downstream
Tssr62990	transcription start site region 62990	1218 bp downstream
Tssr62991	transcription start site region 62991	1245 bp downstream
Tssr62992	transcription start site region 62992	1270 bp downstream
Tssr62993	transcription start site region 62993	1364 bp downstream
Tssr62994	transcription start site region 62994	1470 bp downstream
Tssr62995	transcription start site region 62995	1587 bp downstream
Tssr62996	transcription start site region 62996	1647 bp downstream
Tssr62997	transcription start site region 62997	1789 bp downstream
Tssr62998	transcription start site region 62998	1844 bp downstream
Tssr62999	transcription start site region 62999	1915 bp downstream
Tssr63000	transcription start site region 63000	1972 bp downstream
Tssr63001	transcription start site region 63001	1995 bp downstream