rs587280733 SNP Detail

Summary

• ID
  rs587280733
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:135501473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG CCGCGGCGGC GGGGAGGGGG
  T
  GGCGGCGCGC GAGCGGCTCA GGAGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J
ss915706301	MGP_WTSI_2_135659553	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J
rs587280733					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915706301	MGP_WTSI_2_135659553	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:135501473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12321	CpG island 12321	within coordinates
Plcb4	phospholipase C, beta 4	within coordinates
Rr55690	regulatory region 55690	within coordinates
Tssr20369	transcription start site region 20369	379 bp downstream
Tssr20370	transcription start site region 20370	196 bp downstream
Tssr20371	transcription start site region 20371	within coordinates
Tssr20372	transcription start site region 20372	40 bp upstream
Tssr20373	transcription start site region 20373	72 bp upstream
Tssr20374	transcription start site region 20374	132 bp upstream