rs587305191 SNP Detail

Summary

• ID
  rs587305191
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:74918053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT GGGGGGGGGG GGGGTACCGC
  A
  CCCGCTCCGC GCCCCGCCTC TTTGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J
ss924625287	MGP_WTSI_X_75874447	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J
rs587305191					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924625287	MGP_WTSI_X_75874447	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74918053 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pls3	plastin 3 (T-isoform)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr692140	regulatory region 692140			within coordinates
Rr692141	regulatory region 692141			117 bp proximal
Rr692142	regulatory region 692142			725 bp proximal
Tssr163681	transcription start site region 163681			75 bp downstream
Tssr163682	transcription start site region 163682			89 bp downstream
Tssr163683	transcription start site region 163683			654 bp downstream