rs587323280 SNP Detail

Summary

• ID
  rs587323280
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:9305084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA GCTCCTGCTT CCTGCCCTGT
  K
  TGAGTTCTTG TCCTGACTTC CTTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss924380765	MGP_WTSI_X_9438845	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs587323280					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924380765	MGP_WTSI_X_9438845	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9305084 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	Intron
Rr406085	regulatory region 406085	1702 bp upstream
Tssr160522	transcription start site region 160522	1965 bp downstream
Tssr162883	transcription start site region 162883	1791 bp upstream
Tssr162884	transcription start site region 162884	1726 bp upstream
Tssr162885	transcription start site region 162885	1690 bp upstream
Tssr162886	transcription start site region 162886	1670 bp upstream
Tssr162887	transcription start site region 162887	1632 bp upstream
Tssr162888	transcription start site region 162888	1578 bp upstream
Tssr162889	transcription start site region 162889	1560 bp upstream
Tssr162890	transcription start site region 162890	1490 bp upstream
Tssr162891	transcription start site region 162891	1462 bp upstream
Tssr162892	transcription start site region 162892	1407 bp upstream
Tssr162893	transcription start site region 162893	1302 bp upstream
Tssr162894	transcription start site region 162894	1266 bp upstream
Tssr162895	transcription start site region 162895	1210 bp upstream
Tssr162896	transcription start site region 162896	1183 bp upstream
Tssr162897	transcription start site region 162897	1152 bp upstream
Tssr162898	transcription start site region 162898	1132 bp upstream
Tssr162899	transcription start site region 162899	992 bp upstream
Tssr162900	transcription start site region 162900	974 bp upstream
Tssr162901	transcription start site region 162901	945 bp upstream
Tssr162902	transcription start site region 162902	862 bp upstream
Tssr162903	transcription start site region 162903	808 bp upstream
Tssr162904	transcription start site region 162904	701 bp upstream
Tssr162905	transcription start site region 162905	627 bp upstream
Tssr162906	transcription start site region 162906	612 bp upstream
Tssr162907	transcription start site region 162907	540 bp upstream
Tssr162908	transcription start site region 162908	509 bp upstream
Tssr162909	transcription start site region 162909	1078 bp downstream
Tssr162910	transcription start site region 162910	1103 bp downstream
Tssr162911	transcription start site region 162911	1157 bp downstream