rs587342499 SNP Detail

Summary

• ID
  rs587342499
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40585127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA TCCCCCCCCC CCCCCCCCCC
  C
  GTACATTGAG CTAAGCTTCC GTTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss925284633	MGP_WTSI_3_40530978_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs587342499					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925284633	MGP_WTSI_3_40530978_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40585127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13107	CpG island 13107	273 bp proximal
Intu	inturned planar cell polarity protein	432 bp upstream
Rr67318	regulatory region 67318	1127 bp distal
Rr77556	regulatory region 77556	73 bp proximal
Tssr28946	transcription start site region 28946	29 bp upstream
Tssr28947	transcription start site region 28947	165 bp upstream
Tssr28948	transcription start site region 28948	413 bp upstream
Tssr28949	transcription start site region 28949	487 bp upstream
Tssr28950	transcription start site region 28950	570 bp upstream
Tssr28951	transcription start site region 28951	600 bp upstream
Tssr28952	transcription start site region 28952	630 bp upstream
Tssr28953	transcription start site region 28953	662 bp upstream
Tssr28954	transcription start site region 28954	704 bp upstream