rs587347466 SNP Detail

Summary

• ID
  rs587347466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:103287156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG TAAGAAAGTT TGTTGGTCTT
  Y
  TCTTTAATTA AATCATTATA ACTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss922494515	MGP_WTSI_14_103049720	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs587347466					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922494515	MGP_WTSI_14_103049720	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103287156 () rs orientation: forward

Symbol	Name	Function Class
Acod1	aconitate decarboxylase 1	Intron
Gm41235	predicted gene, 41235	980 bp upstream
Rr404266	regulatory region 404266	1741 bp upstream
Rr496962	regulatory region 496962	573 bp distal
Rr496963	regulatory region 496963	1786 bp proximal
Rr496964	regulatory region 496964	1838 bp proximal
Rr496965	regulatory region 496965	1885 bp proximal
Tssr4512	transcription start site region 4512	625 bp downstream
Tssr126972	transcription start site region 126972	815 bp downstream
Tssr126973	transcription start site region 126973	688 bp downstream
Tssr126974	transcription start site region 126974	458 bp downstream
Tssr126975	transcription start site region 126975	444 bp downstream
Tssr126976	transcription start site region 126976	421 bp downstream
Tssr126977	transcription start site region 126977	396 bp downstream
Tssr126978	transcription start site region 126978	354 bp downstream
Tssr126979	transcription start site region 126979	335 bp downstream
Tssr126980	transcription start site region 126980	323 bp downstream
Tssr126981	transcription start site region 126981	112 bp downstream
Tssr126982	transcription start site region 126982	54 bp downstream
Tssr126983	transcription start site region 126983	17 bp downstream
Tssr126984	transcription start site region 126984	145 bp upstream
Tssr126985	transcription start site region 126985	581 bp upstream
Tssr126986	transcription start site region 126986	1314 bp upstream
Tssr126987	transcription start site region 126987	1353 bp upstream
Tssr126988	transcription start site region 126988	1570 bp upstream
Tssr126989	transcription start site region 126989	1593 bp upstream
Tssr126990	transcription start site region 126990	1800 bp upstream
Tssr126991	transcription start site region 126991	1872 bp upstream
Tssr130074	transcription start site region 130074	1338 bp upstream
Tssr130075	transcription start site region 130075	1299 bp upstream
Tssr130076	transcription start site region 130076	1284 bp upstream
Tssr130077	transcription start site region 130077	1013 bp upstream
Tssr130078	transcription start site region 130078	986 bp upstream
Tssr130079	transcription start site region 130079	965 bp upstream
Tssr130080	transcription start site region 130080	1703 bp downstream
Tssr130081	transcription start site region 130081	1758 bp downstream
Tssr130082	transcription start site region 130082	1785 bp downstream