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rs587366465 SNP Detail
Summary
  • ID
    rs587366465
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44127941 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ATCCT CCCTCCTTTG TATCTTCCCT
R
CCCACATCTC TTCCATCCCC CCTCT                                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss918712683 MGP_WTSI_7_44478517 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs587366465 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss918712683 MGP_WTSI_7_44478517 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127941 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2223 transcription start site region 2223 1984 bp downstream
Tssr2224 transcription start site region 2224 1138 bp downstream
Tssr2225 transcription start site region 2225 1098 bp downstream
Tssr2226 transcription start site region 2226 572 bp downstream
Tssr2227 transcription start site region 2227 494 bp upstream
Tssr2228 transcription start site region 2228 1561 bp upstream
Tssr2229 transcription start site region 2229 1837 bp upstream
Tssr66217 transcription start site region 66217 1996 bp downstream
Tssr66218 transcription start site region 66218 1942 bp downstream
Tssr66219 transcription start site region 66219 1900 bp downstream
Tssr66220 transcription start site region 66220 1866 bp downstream
Tssr66221 transcription start site region 66221 1847 bp downstream
Tssr66222 transcription start site region 66222 1794 bp downstream
Tssr66223 transcription start site region 66223 1727 bp downstream
Tssr66224 transcription start site region 66224 1704 bp downstream
Tssr66225 transcription start site region 66225 1684 bp downstream
Tssr66226 transcription start site region 66226 1671 bp downstream
Tssr66227 transcription start site region 66227 1630 bp downstream
Tssr66228 transcription start site region 66228 1627 bp downstream
Tssr66229 transcription start site region 66229 1614 bp downstream
Tssr66230 transcription start site region 66230 1594 bp downstream
Tssr66231 transcription start site region 66231 1559 bp downstream
Tssr66232 transcription start site region 66232 1547 bp downstream
Tssr66233 transcription start site region 66233 1525 bp downstream
Tssr66234 transcription start site region 66234 1495 bp downstream
Tssr66235 transcription start site region 66235 1475 bp downstream
Tssr66236 transcription start site region 66236 1448 bp downstream
Tssr66237 transcription start site region 66237 1427 bp downstream
Tssr66238 transcription start site region 66238 1408 bp downstream
Tssr66239 transcription start site region 66239 1357 bp downstream
Tssr66240 transcription start site region 66240 1276 bp downstream
Tssr66241 transcription start site region 66241 1264 bp downstream
Tssr66242 transcription start site region 66242 1184 bp downstream
Tssr66243 transcription start site region 66243 1170 bp downstream
Tssr66244 transcription start site region 66244 1119 bp downstream
Tssr66245 transcription start site region 66245 1057 bp downstream
Tssr66246 transcription start site region 66246 1029 bp downstream
Tssr66247 transcription start site region 66247 982 bp downstream
Tssr66248 transcription start site region 66248 941 bp downstream
Tssr66249 transcription start site region 66249 918 bp downstream
Tssr66250 transcription start site region 66250 899 bp downstream
Tssr66251 transcription start site region 66251 874 bp downstream
Tssr66252 transcription start site region 66252 843 bp downstream
Tssr66253 transcription start site region 66253 815 bp downstream
Tssr66254 transcription start site region 66254 767 bp downstream
Tssr66255 transcription start site region 66255 740 bp downstream
Tssr66256 transcription start site region 66256 691 bp downstream
Tssr66257 transcription start site region 66257 680 bp downstream
Tssr66258 transcription start site region 66258 637 bp downstream
Tssr66259 transcription start site region 66259 601 bp downstream
Tssr66260 transcription start site region 66260 494 bp downstream
Tssr66261 transcription start site region 66261 473 bp downstream
Tssr66262 transcription start site region 66262 466 bp downstream
Tssr66263 transcription start site region 66263 454 bp downstream
Tssr66264 transcription start site region 66264 430 bp downstream
Tssr66265 transcription start site region 66265 387 bp downstream
Tssr66266 transcription start site region 66266 370 bp downstream
Tssr66267 transcription start site region 66267 333 bp downstream
Tssr66268 transcription start site region 66268 317 bp downstream
Tssr66269 transcription start site region 66269 281 bp downstream
Tssr66270 transcription start site region 66270 246 bp downstream
Tssr66271 transcription start site region 66271 214 bp downstream
Tssr66272 transcription start site region 66272 162 bp downstream
Tssr66273 transcription start site region 66273 144 bp downstream
Tssr66274 transcription start site region 66274 139 bp downstream
Tssr66275 transcription start site region 66275 119 bp downstream
Tssr66276 transcription start site region 66276 99 bp downstream
Tssr66277 transcription start site region 66277 79 bp downstream
Tssr66278 transcription start site region 66278 35 bp downstream
Tssr66279 transcription start site region 66279 within coordinates
Tssr66280 transcription start site region 66280 21 bp upstream
Tssr66281 transcription start site region 66281 52 bp upstream
Tssr66282 transcription start site region 66282 78 bp upstream
Tssr66283 transcription start site region 66283 92 bp upstream
Tssr66284 transcription start site region 66284 109 bp upstream
Tssr66285 transcription start site region 66285 124 bp upstream
Tssr66286 transcription start site region 66286 161 bp upstream
Tssr66287 transcription start site region 66287 179 bp upstream
Tssr66288 transcription start site region 66288 215 bp upstream
Tssr66289 transcription start site region 66289 263 bp upstream
Tssr66290 transcription start site region 66290 324 bp upstream
Tssr66291 transcription start site region 66291 353 bp upstream
Tssr66292 transcription start site region 66292 391 bp upstream
Tssr66293 transcription start site region 66293 409 bp upstream
Tssr66294 transcription start site region 66294 430 bp upstream
Tssr66295 transcription start site region 66295 715 bp upstream
Tssr66296 transcription start site region 66296 848 bp upstream
Tssr66297 transcription start site region 66297 891 bp upstream
Tssr66298 transcription start site region 66298 916 bp upstream
Tssr66299 transcription start site region 66299 985 bp upstream
Tssr66300 transcription start site region 66300 992 bp upstream
Tssr66301 transcription start site region 66301 1016 bp upstream
Tssr66302 transcription start site region 66302 1030 bp upstream
Tssr66303 transcription start site region 66303 1071 bp upstream
Tssr66304 transcription start site region 66304 1079 bp upstream
Tssr66305 transcription start site region 66305 1089 bp upstream
Tssr66306 transcription start site region 66306 1123 bp upstream
Tssr66307 transcription start site region 66307 1180 bp upstream
Tssr66308 transcription start site region 66308 1233 bp upstream
Tssr66309 transcription start site region 66309 1254 bp upstream
Tssr66310 transcription start site region 66310 1292 bp upstream
Tssr66311 transcription start site region 66311 1369 bp upstream
Tssr66312 transcription start site region 66312 1385 bp upstream
Tssr66313 transcription start site region 66313 1406 bp upstream
Tssr66314 transcription start site region 66314 1414 bp upstream
Tssr66315 transcription start site region 66315 1434 bp upstream
Tssr66316 transcription start site region 66316 1493 bp upstream
Tssr66317 transcription start site region 66317 1505 bp upstream
Tssr66318 transcription start site region 66318 1550 bp upstream
Tssr66319 transcription start site region 66319 1573 bp upstream
Tssr66320 transcription start site region 66320 1600 bp upstream
Tssr66321 transcription start site region 66321 1618 bp upstream
Tssr66322 transcription start site region 66322 1638 bp upstream
Tssr66323 transcription start site region 66323 1684 bp upstream
Tssr66324 transcription start site region 66324 1713 bp upstream
Tssr66325 transcription start site region 66325 1743 bp upstream
Tssr66326 transcription start site region 66326 1784 bp upstream
Tssr66327 transcription start site region 66327 1798 bp upstream
Tssr66328 transcription start site region 66328 1814 bp upstream
Tssr66329 transcription start site region 66329 1853 bp upstream
Tssr66330 transcription start site region 66330 1872 bp upstream
Tssr66331 transcription start site region 66331 1886 bp upstream
Tssr66332 transcription start site region 66332 1907 bp upstream
Tssr66333 transcription start site region 66333 1955 bp upstream
Tssr66334 transcription start site region 66334 1967 bp upstream
Tssr66335 transcription start site region 66335 1976 bp upstream
Tssr66336 transcription start site region 66336 1985 bp upstream
Tssr72199 transcription start site region 72199 1034 bp upstream
Tssr72200 transcription start site region 72200 76 bp upstream
Tssr72201 transcription start site region 72201 413 bp downstream
Tssr72202 transcription start site region 72202 1276 bp downstream
Tssr72203 transcription start site region 72203 1662 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory