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rs587367846 SNP Detail
Summary
  • ID
    rs587367846
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr5:137178918 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTGAT TACTTCAGCA GTGGTGGTGA
C
ATCACTAGTG GTTGTGACTT CAGGA                                      

C = C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S5/SvEvBrd
B10.RIII-H2 H2-T18/(71NS)SnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57L/J
C58/J
CAST/EiJ
CE/J
FVB/NJ
JF1/MsJ
LEWES/EiJ
MOLF/EiJ
NON/ShiLtJ
NZB/BlNJ
PL/J
PWK/PhJ
QSi5/Ianm
RIIIS/J
SJL/J
SM/J
ST/bJ
ss917727719 MGP_WTSI_5_137150070 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S5/SvEvBrd
B10.RIII-H2 H2-T18/(71NS)SnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57L/J
C58/J
CAST/EiJ
CE/J
FVB/NJ
JF1/MsJ
LEWES/EiJ
MOLF/EiJ
NON/ShiLtJ
NZB/BlNJ
PL/J
PWK/PhJ
QSi5/Ianm
RIIIS/J
SJL/J
SM/J
ST/bJ
rs587367846 SNP C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss917727719 MGP_WTSI_5_137150070 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:137178918 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Muc17 mucin 17, cell surface associated within coordinates
Tssr1677 transcription start site region 1677 802 bp upstream
Tssr1678 transcription start site region 1678 414 bp downstream
Tssr1679 transcription start site region 1679 1357 bp downstream
Tssr1680 transcription start site region 1680 1377 bp upstream
Tssr1681 transcription start site region 1681 1400 bp downstream
Tssr1682 transcription start site region 1682 1417 bp downstream
Tssr1683 transcription start site region 1683 1506 bp downstream
Tssr1684 transcription start site region 1684 1522 bp downstream
Tssr1685 transcription start site region 1685 1536 bp upstream
Tssr1686 transcription start site region 1686 1563 bp downstream
Tssr1687 transcription start site region 1687 1614 bp downstream
Tssr1688 transcription start site region 1688 1638 bp downstream
Tssr1689 transcription start site region 1689 1657 bp upstream
Tssr1690 transcription start site region 1690 1824 bp upstream
Tssr1691 transcription start site region 1691 1828 bp downstream
Tssr1692 transcription start site region 1692 1992 bp downstream
Tssr49309 transcription start site region 49309 269 bp downstream
Tssr49310 transcription start site region 49310 68 bp upstream
Tssr49311 transcription start site region 49311 82 bp upstream
Tssr49312 transcription start site region 49312 462 bp upstream
Tssr49313 transcription start site region 49313 710 bp upstream
Tssr49314 transcription start site region 49314 981 bp upstream
Tssr49315 transcription start site region 49315 997 bp upstream
Tssr49316 transcription start site region 49316 1913 bp upstream
Tssr53919 transcription start site region 53919 422 bp upstream
Tssr53920 transcription start site region 53920 387 bp upstream
Tssr53921 transcription start site region 53921 229 bp upstream
Tssr53922 transcription start site region 53922 213 bp upstream
Tssr53923 transcription start site region 53923 171 bp upstream
Tssr53924 transcription start site region 53924 152 bp upstream
Tssr53925 transcription start site region 53925 120 bp upstream
Tssr53926 transcription start site region 53926 86 bp upstream
Tssr53927 transcription start site region 53927 53 bp downstream
Tssr53928 transcription start site region 53928 71 bp downstream
Tssr53929 transcription start site region 53929 108 bp downstream
Tssr53930 transcription start site region 53930 173 bp downstream
Tssr53931 transcription start site region 53931 198 bp downstream
Tssr53932 transcription start site region 53932 214 bp downstream
Tssr53933 transcription start site region 53933 252 bp downstream
Tssr53934 transcription start site region 53934 284 bp downstream
Tssr53935 transcription start site region 53935 335 bp downstream
Tssr53936 transcription start site region 53936 356 bp downstream
Tssr53937 transcription start site region 53937 446 bp downstream
Tssr53938 transcription start site region 53938 482 bp downstream
Tssr53939 transcription start site region 53939 536 bp downstream
Tssr53940 transcription start site region 53940 712 bp downstream
Tssr53941 transcription start site region 53941 752 bp downstream
Tssr53942 transcription start site region 53942 811 bp downstream
Tssr53943 transcription start site region 53943 976 bp downstream
Tssr53944 transcription start site region 53944 1025 bp downstream
Tssr53945 transcription start site region 53945 1035 bp downstream
Tssr53946 transcription start site region 53946 1056 bp downstream
Tssr53947 transcription start site region 53947 1164 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory