rs587381364 SNP Detail

Summary

• ID
  rs587381364
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6339581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTG GGGCGCGCAG GTGCGGCAGG
  T
  GCGGTGGCAG GTGCGGCCGG TCCCG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J
ss920704157	MGP_WTSI_11_6389581	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J
rs587381364					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920704157	MGP_WTSI_11_6389581	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6339581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2557	CpG island 2557	within coordinates
Tssr100241	transcription start site region 100241	501 bp downstream
Tssr100242	transcription start site region 100242	475 bp downstream
Tssr100243	transcription start site region 100243	444 bp downstream
Tssr100244	transcription start site region 100244	184 bp downstream
Tssr100245	transcription start site region 100245	146 bp downstream
Tssr100246	transcription start site region 100246	128 bp downstream
Tssr100247	transcription start site region 100247	8 bp downstream
Tssr100248	transcription start site region 100248	within coordinates
Zmiz2	zinc finger, MIZ-type containing 2	within coordinates