rs587406477 SNP Detail

Summary

• ID
  rs587406477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCA CTCTAAACCC CCTCCCTCCC
  Y
  GCTCTCCTCC CTCCTCCTAC ATTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917999125	MGP_WTSI_6_49048822	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs587406477					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917999125	MGP_WTSI_6_49048822	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025756 () rs orientation: forward

Symbol	Name	Function Class
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56343	transcription start site region 56343	1523 bp downstream
Tssr56344	transcription start site region 56344	1499 bp downstream
Tssr56345	transcription start site region 56345	1480 bp downstream
Tssr56346	transcription start site region 56346	1427 bp downstream
Tssr56347	transcription start site region 56347	1409 bp downstream
Tssr56348	transcription start site region 56348	1386 bp downstream
Tssr56349	transcription start site region 56349	1065 bp downstream
Tssr56350	transcription start site region 56350	1036 bp downstream
Tssr56351	transcription start site region 56351	1009 bp downstream
Tssr56352	transcription start site region 56352	990 bp downstream
Tssr56353	transcription start site region 56353	922 bp downstream
Tssr56354	transcription start site region 56354	908 bp downstream
Tssr56355	transcription start site region 56355	884 bp downstream
Tssr56356	transcription start site region 56356	866 bp downstream
Tssr56357	transcription start site region 56357	854 bp downstream
Tssr56358	transcription start site region 56358	836 bp downstream
Tssr56359	transcription start site region 56359	805 bp downstream
Tssr56360	transcription start site region 56360	758 bp downstream
Tssr56361	transcription start site region 56361	1060 bp upstream
Tssr56362	transcription start site region 56362	1288 bp upstream
Tssr56363	transcription start site region 56363	1575 bp upstream
Tssr60849	transcription start site region 60849	1460 bp upstream
Tssr60850	transcription start site region 60850	1407 bp upstream
Tssr60851	transcription start site region 60851	945 bp upstream
Tssr60852	transcription start site region 60852	916 bp upstream
Tssr60853	transcription start site region 60853	904 bp upstream
Tssr60854	transcription start site region 60854	887 bp upstream
Tssr60855	transcription start site region 60855	842 bp upstream
Tssr60856	transcription start site region 60856	815 bp upstream
Tssr60857	transcription start site region 60857	714 bp upstream
Tssr60858	transcription start site region 60858	1617 bp downstream
Tssr60859	transcription start site region 60859	1659 bp downstream
Tssr60860	transcription start site region 60860	1673 bp downstream
Tssr60861	transcription start site region 60861	1691 bp downstream