rs587504928 SNP Detail

Summary

• ID
  rs587504928
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52315303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG AGAGAAGACG GGAAGGGGGG
  D
  GGGGAGAGGA GAGGAGAGAG GAGAA                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	C58/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	SEA/GnJ	SM/J	ST/bJ
ss922308982	MGP_WTSI_14_52077846	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	A	A	A	A	A	G	G	A	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	C58/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	SEA/GnJ	SM/J	ST/bJ
rs587504928					SNP	T	T	T	A	A	A	A	A	A	G	G	A	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922308982	MGP_WTSI_14_52077846	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52315303 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpc	heterogeneous nuclear ribonucleoprotein C	within coordinates
Rr289029	regulatory region 289029	1298 bp proximal
Tssr128488	transcription start site region 128488	184 bp downstream
Tssr128489	transcription start site region 128489	1680 bp downstream