rs587514129 SNP Detail

Summary

• ID
  rs587514129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23924947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACC CCACTCCACC CCACCCCACC
  Y
  CACCCCCGCC CTCTCCCAAC CCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss921734551	MGP_WTSI_13_23740964	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs587514129					SNP	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921734551	MGP_WTSI_13_23740964	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23924947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	902 bp distal
Gm60901	predicted gene, 60901	1337 bp upstream
H1f2	H1.2 linker histone, cluster member	1433 bp downstream
Rr369656	regulatory region 369656	426 bp downstream
Rr388130	regulatory region 388130	692 bp upstream
Rr475931	regulatory region 475931	1778 bp distal
Rr475932	regulatory region 475932	847 bp proximal
Rr475933	regulatory region 475933	1348 bp proximal
Tssr118855	transcription start site region 118855	1766 bp downstream
Tssr118856	transcription start site region 118856	1029 bp downstream
Tssr118857	transcription start site region 118857	789 bp downstream
Tssr118858	transcription start site region 118858	1337 bp upstream