rs587524776 SNP Detail

Summary

• ID
  rs587524776
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100126202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGG AGCGAGGCCT AATGGCGGGG
  A
  GGGGGAGGGG GCCTGGCGAG CGGCT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	JF1/MsJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J
ss917584350	MGP_WTSI_5_99978343	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	JF1/MsJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J
rs587524776					SNP	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917584350	MGP_WTSI_5_99978343	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100126202 () rs orientation: forward

Symbol	Name	Function Class
4930524J08Rik	RIKEN cDNA 4930524J08 gene	592 bp upstream
Cpgi16102	CpG island 16102	within coordinates
Gm17092	predicted gene 17092	within coordinates
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	within coordinates
Rr378342	regulatory region 378342	95 bp upstream
Tssr47472	transcription start site region 47472	160 bp upstream
Tssr47473	transcription start site region 47473	228 bp upstream
Tssr47474	transcription start site region 47474	326 bp upstream
Tssr52063	transcription start site region 52063	1750 bp upstream
Tssr52064	transcription start site region 52064	505 bp downstream
Tssr52065	transcription start site region 52065	559 bp downstream
Tssr52066	transcription start site region 52066	571 bp downstream