rs587573885 SNP Detail

Summary

• ID
  rs587573885
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38107379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA CAGAATCTAC CCCACCCCCC
  S
  TCTCTCTTAG CCCCACTGTT TTCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss924268992	MGP_WTSI_19_38118931	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs587573885					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924268992	MGP_WTSI_19_38118931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38107379 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	293 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Rr547239	regulatory region 547239	982 bp proximal
Tssr156245	transcription start site region 156245	597 bp downstream
Tssr159114	transcription start site region 159114	612 bp upstream
Tssr159115	transcription start site region 159115	556 bp upstream
Tssr159116	transcription start site region 159116	454 bp upstream
Tssr159117	transcription start site region 159117	440 bp upstream