rs6152119 SNP Detail

Summary

• ID
  rs6152119
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAGTGT TGGGAGTGAA
  GGGGCGACTT AACTAGCAGG GGATTCTTCT CGCCCGCCCG GAGTCTCCTC CCTGTGTTTG
  GGAGGCAGGC GTGGTGGTGG TGGCGGTGGC GGTGGCCCCG GCTTGGCTTT GCTGGTCATT
  AGAGTCTGGC GCAGGCTTTG CTTTCCTGTC TTAACCCTGA TCCCTTGGTT TCCGAGAGTT
  K
  CTCAGCAGTG TTTGTGGCGC GAAGATTCCC ACCGCCGACC CCTGTCATGA TTAAAGGAGG
  CTGGCTGTAG GATTCAACAC GGGAAAGCCA GTCGTGGAAG GGAGAGGGGG CTGTCTCGAC
  CACTGGCCTC CGGGTCGATA GAGAACTTTT CTTTTTTGTC AATTGCCAGG GGCCAACTGC
  GGAGCCTTTG CCCTTCTCGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8557612	WI_WGS_14_50543872	WI	MOUSE	f	SNP							G		T
ss51516767	NES14634621	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G		T		G	G	G		T	G	G		G
ss324646619	CHEV_14_60060127	CHEVERUD	SCREENING_POP	f	SNP													T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6152119					SNP	G	G	T	G	G	G	G	T	T	G	G	G	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516767	NES14634621	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678739 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	within coordinates
Gm45935	predicted gene, 45935	410 bp upstream
Rr404137	regulatory region 404137	232 bp downstream
Rr493049	regulatory region 493049	426 bp distal
Rr493050	regulatory region 493050	299 bp distal
Rr493051	regulatory region 493051	within coordinates
Setdb2	SET domain, bifurcated 2	410 bp upstream
Tssr125903	transcription start site region 125903	708 bp downstream
Tssr125904	transcription start site region 125904	294 bp downstream
Tssr129008	transcription start site region 129008	403 bp upstream
Tssr129009	transcription start site region 129009	193 bp upstream
Tssr129010	transcription start site region 129010	182 bp upstream
Tssr129011	transcription start site region 129011	12 bp downstream
Tssr129012	transcription start site region 129012	19 bp downstream
Tssr129013	transcription start site region 129013	21 bp downstream