rs6152314 SNP Detail

Summary

• ID
  rs6152314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56928055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTTGCT ACAGACTTCC
  AGATTTGAAT ATCATTACTT CTGTACATTT TGAAAAGGCA TGGTCACCAG CAAGTGTTAG
  AAAGCAAACC ATGATGCTTC CATGAGAAGT GGATCTAGAC AGGAATCTCC TGCAATACCC
  ATCCTTAGCA AGAAGCCTCT ATCAAATGAA AAGAACCAGC TAGGCTCAAC ACTTCTGTTT
  Y
  CTGAGGGTAG AAAGTTAACA AAATACACTC TCCTTGGTGT TGGTTTTCTG CACACCATTA
  TACCTGCCAT GCATTCTCTG TTGTTCCTCC CACTTCCTGG GCTGATGAAT CAACACCACT
  TGAACTGCTT GATGGCAGCT TGTGTTTACT TCACACAAAC CTTAACCTTC CCTTTTTTCC
  TCCTACTGAC ACACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8557807	WI_WGS_1_57441984	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6152314					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56928055 () rs orientation: forward

Symbol	Name	Function Class
Gm51624	predicted gene, 51624	within coordinates
Satb2	special AT-rich sequence binding protein 2	within coordinates