rs6152822 SNP Detail

Summary

• ID
  rs6152822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115054511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGTTTATCCG TCTGGTAGAA CCTGGCTCGC CGGCCGAGAA GTCGGGGTTG
  Y
  TGGCTGGAGA CCGATTGGTG GAGGTGAACG GTGAGAATGT GGAGAAGGAG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8558315	WI_WGS_11_116051977	WI	MOUSE	f	SNP	T	C
ss323861541	CHEV_11_115024999	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6152822					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115054511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	within coordinates
Cpgi4110	CpG island 4110	1049 bp proximal
Gm72084	predicted gene, 72084	within coordinates
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rab37	RAB37, member RAS oncogene family	1449 bp downstream
Rr369433	regulatory region 369433	655 bp downstream
Rr403111	regulatory region 403111	322 bp downstream
Rr459783	regulatory region 459783	334 bp distal
Rr459784	regulatory region 459784	627 bp proximal
Rr459785	regulatory region 459785	884 bp proximal
Tssr3727	transcription start site region 3727	314 bp downstream
Tssr105840	transcription start site region 105840	337 bp downstream
Tssr105841	transcription start site region 105841	302 bp downstream
Tssr105842	transcription start site region 105842	272 bp downstream
Tssr105843	transcription start site region 105843	266 bp downstream
Tssr105844	transcription start site region 105844	236 bp downstream
Tssr111730	transcription start site region 111730	550 bp upstream