rs6153161 SNP Detail

Summary

• ID
  rs6153161
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:59628762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAATGGAA AGTGGTATAT GGTTACATGG TACTGATATA
  GTAGAAACAT GAGTTTTAGA GGCCTGTGTT AGAGAAAAAC CTCAAGATTT AGGAGAACAC
  K
  TTCATTACAA AGCTATTGCT TCACATAAAA CTCCGAGCTA GATAAACAGC TTAAAAATAA
  TATAGTCTGG CCTGGCTAAG TATGTAGTTA GTTGTAAGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8558654	WI_WGS_7_49353657	WI	MOUSE	f	SNP		G	T
ss144684768	ENSMUSSNP4735269	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6153161					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59628762 () rs orientation: forward

Symbol	Name	Function Class
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	within coordinates
Rr157355	regulatory region 157355	839 bp proximal
Rr165360	regulatory region 165360	67 bp distal
Snhg14	small nucleolar RNA host gene 14	722 bp upstream
Snord64	small nucleolar RNA, C/D box 64	158 bp upstream
Snord107	small nucleolar RNA, C/D box 107	1862 bp downstream
Tssr72695	transcription start site region 72695	1400 bp upstream
Tssr72696	transcription start site region 72696	1276 bp upstream
Tssr72697	transcription start site region 72697	140 bp upstream
Tssr72698	transcription start site region 72698	1920 bp downstream