rs6153414 SNP Detail

Summary

• ID
  rs6153414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83301884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTAGCTA AGGTGGCTTC
  CTTCCCTAAG TCTCTGGGTC TTGATTTATT GGTGATGGAT TTTTGTTCTT CAATAAAATG
  AAAGGCATCA TATACATGCA TATGGACATA TGGATGCCCA GGTACACACA CTGCAAGTTT
  ATGAGCCCAT GCAACTGTAG ATAGTGACCC ATTCCTAGAT TGCCAGGAGG TTCAACTGAG
  Y
  GTCTGGGAAA ACCTTAGAGG ACAAGTAGCC ACGGTTCATT GCAATACCTT CTCTGTGCCA
  GGCACTGGGC TTTCCGTGGA CAACCTCACA ATACCTATGA AGTTTCTTGG CCAAGGTCAT
  CCTTTAAATT ATTTAAATAA ATGGCAGAGC TGGGAGTCTA ACCTTGATGG TTCTTGCTCC
  AAACCCTGCC CTTTATTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8558907	WI_WGS_11_84061805	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6153414					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83301884 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3411	CpG island 3411	700 bp distal
D11Bhm144	DNA segment, Chr 11, Boehm 144	612 bp proximal
Gm72478	predicted gene, 72478	422 bp upstream
Rasl10b	RAS-like, family 10, member B	within coordinates
Rr452947	regulatory region 452947	1911 bp distal
Rr452948	regulatory region 452948	976 bp distal
Rr452949	regulatory region 452949	841 bp distal
Rr452950	regulatory region 452950	405 bp distal
Tssr103692	transcription start site region 103692	1769 bp downstream
Tssr103693	transcription start site region 103693	1340 bp downstream
Tssr103694	transcription start site region 103694	1331 bp downstream
Tssr103695	transcription start site region 103695	1309 bp downstream