rs6153543 SNP Detail

Summary

• ID
  rs6153543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83301958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGAAAG GCATCATATA
  CATGCATATG GACATATGGA TGCCCAGGTA CACACACTGC AAGTTTATGA GCCCATGCAA
  CTGTAGATAG TGACCCATTC CTAGATTGCC AGGAGGTTCA ACTGAGCGTC TGGGAAAACC
  TTAGAGGACA AGTAGCCACG GTTCATTGCA ATACCTTCTC TGTGCCAGGC ACTGGGCTTT
  Y
  CGTGGACAAC CTCACAATAC CTATGAAGTT TCTTGGCCAA GGTCATCCTT TAAATTATTT
  AAATAAATGG CAGAGCTGGG AGTCTAACCT TGATGGTTCT TGCTCCAAAC CCTGCCCTTT
  ATTTACCATT GTGCACATAT ACATACATAA TCGTAGGTTG AGTGTTGTGA ACCAGGACAG
  CCTGGGGGGA GGCATTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8559036	WI_WGS_11_84061879	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6153543					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83301958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3411	CpG island 3411	774 bp distal
D11Bhm144	DNA segment, Chr 11, Boehm 144	538 bp proximal
Gm72478	predicted gene, 72478	496 bp upstream
Rasl10b	RAS-like, family 10, member B	within coordinates
Rr452947	regulatory region 452947	1985 bp distal
Rr452948	regulatory region 452948	1050 bp distal
Rr452949	regulatory region 452949	915 bp distal
Rr452950	regulatory region 452950	479 bp distal
Tssr103692	transcription start site region 103692	1843 bp downstream
Tssr103693	transcription start site region 103693	1414 bp downstream
Tssr103694	transcription start site region 103694	1405 bp downstream
Tssr103695	transcription start site region 103695	1383 bp downstream