rs6153684 SNP Detail

Summary

• ID
  rs6153684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:139368871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTAATGG AAGGAGCCCT
  CTCTATGAGC ACAGTAGAAC AAGTGATTAC CATTGTTAGT AAAACATTCC TTAACTATGA
  AGTGTGAAGA TAGGGTTCTT AATGATCACA TCCAGGCAAA TTGTAGCCAT TGTTACTTCT
  AAGAGATTAA AGGTCTCATG ACATTTTAAT TGCTATCACA CATTTTCATT TCAGGTAAGG
  R
  AAGTCTAAAT TTGTATTTCT AGAAGTCACA TGCATTAATT GCACATTGGT ACTGAGACAG
  TAATGTTTAA ACATCAGCCT TTGTTTGGAT GTATAATAAT AGACCATCAA CTGGATTTTC
  CATTATATTT ATATGATTTA TATTTATATT TTTGGTTCAT TGCAAATTTA AGAAATCTCC
  ATAGATGAAT CTATCTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8559177	WI_WGS_1_140314047	WI	MOUSE	f	SNP							G		A
ss49683645	NES12979308	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6153684					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683645	NES12979308	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:139368871 () rs orientation: forward

Symbol	Name	Function Class
Gm70730	predicted gene, 70730	within coordinates
Zbtb41	zinc finger and BTB domain containing 41	within coordinates