rs6153686 SNP Detail

Summary

• ID
  rs6153686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143909608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCATCAT ACCTTTATGT
  AAATTGATTT CTCTGATGCA TTTACTCGAG GAATTGCTTT TTGTTACAAT TTCAGCCCTG
  ACCCAAATGA ATCTGCATTT CCTGCCCTAG GTCTTTAAAC TGCCCCCCCC CAACGTTTTA
  ATCGCTCCGA ATTCCTTTTT TAAAAGGGAG GGGGAGGGAG GAGATTCCAA GCTGCTCCCC
  R
  CCCCCATCTT TAGTGAGAGG TAAATATATA TGTATATTTT TTTTGAAAAG GAAACATTAC
  ACTGAGAAAA GCATCCAGTA ACCCCATTAG CTAAAGCTCT TAAGGACAAG CAATACCTTA
  ATGCTGATTA AATCTAAAAG AGATGAATCA AGAGGACTGA CCAGAAAGTG ACTCCCCTGA
  TAACTAAGGA CGGGCCCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8559179	WI_WGS_3_144722060	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6153686					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143909608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13894	CpG island 13894	1186 bp distal
Cpgi13895	CpG island 13895	703 bp proximal
Lmo4	LIM domain only 4	Intron
Rr398096	regulatory region 398096	1632 bp upstream
Rr406521	regulatory region 406521	within coordinates
Rr586599	regulatory region 586599	1841 bp distal
Rr586600	regulatory region 586600	961 bp distal
Rr586601	regulatory region 586601	40 bp proximal
Rr586602	regulatory region 586602	1363 bp proximal
Tssr35963	transcription start site region 35963	1894 bp upstream
Tssr35964	transcription start site region 35964	1878 bp upstream
Tssr35965	transcription start site region 35965	1502 bp upstream
Tssr35966	transcription start site region 35966	1480 bp upstream
Tssr35967	transcription start site region 35967	1232 bp upstream
Tssr35968	transcription start site region 35968	1011 bp downstream
Tssr35969	transcription start site region 35969	1039 bp downstream
Tssr35970	transcription start site region 35970	1109 bp downstream
Tssr35971	transcription start site region 35971	1318 bp downstream
Tssr35972	transcription start site region 35972	1660 bp downstream