rs6153965 SNP Detail

Summary

• ID
  rs6153965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15148308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATAAGGA GACAAAATAG
  CACGGAAAGA ATGGTCAGGC TAGAGATGCG AAGCAAGGAA GTCAATTCCC AAGCAAGGAA
  TGGGACCATA GGGAAAACCA TCAAAAGCTA GAAGAGAAGG TTAATGATAG TAATTACAAC
  TTAGGCAGGG CAGGTGGTGG TGGTGGGGAG AATAATAGGG AAGGCAGCGG GCACCAAAAG
  R
  GAAAAAAAAA TCATTATGAT AAAAGAGACC TTGGCTTCTG TTGTAAAATA AGAAAACGAA
  TACGTTCAAA GAAATTGTTT TTGAAGGTAG CTGGGAGTAG CTGGAGGGGC ATCACAATGT
  CTAAGGCTTC CGTCAGCGCT CCCAGCACAA GGGAGAGAGA GTGCCTGCCA GTAAATTGGG
  CAGCAGGGAT GAGACCGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss8559458	WI_WGS_4_14661228	WI	MOUSE	f	SNP			A	G
ss37889743	NES08640071	PERLEGEN	MM_PANEL2	f	SNP	G	A			A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs6153965					SNP	G	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889743	NES08640071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15148308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	468 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	633 bp downstream
Tssr40969	transcription start site region 40969	653 bp downstream
Tssr40970	transcription start site region 40970	669 bp downstream
Tssr40971	transcription start site region 40971	703 bp downstream
Tssr40972	transcription start site region 40972	743 bp downstream
Tssr40973	transcription start site region 40973	1447 bp downstream