rs6154165 SNP Detail

Summary

• ID
  rs6154165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:59628915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAATAATA TAGTCTGGCC TGGCTAAGTA TGTAGTTAGT
  TGTAAGGTAA ACAGAAAGTA TGTCCTTTGG AGTGCGGTAG GGGGTGGGGG CACACAGATA
  Y
  ACACTAATGA ATGAGTGAGT GAATGAAAAA ATAGGTGTGT GGCGAGCCTA TAAAATAAGC
  ACTTGCAACA GCAAGGCAGG AATATTATGA ATTGGATGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8559659	WI_WGS_7_49353810	WI	MOUSE	f	SNP	C	T
ss144684781	ENSMUSSNP4045537	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6154165					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59628915 () rs orientation: forward

Symbol	Name	Function Class
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	within coordinates
Rr157355	regulatory region 157355	686 bp proximal
Rr165360	regulatory region 165360	220 bp distal
Snhg14	small nucleolar RNA host gene 14	875 bp upstream
Snord64	small nucleolar RNA, C/D box 64	311 bp upstream
Snord107	small nucleolar RNA, C/D box 107	1709 bp downstream
Tssr72695	transcription start site region 72695	1553 bp upstream
Tssr72696	transcription start site region 72696	1429 bp upstream
Tssr72697	transcription start site region 72697	293 bp upstream
Tssr72698	transcription start site region 72698	1767 bp downstream