rs6154642 SNP Detail

Summary

• ID
  rs6154642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:22818333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTCTAGT CTAGTCAGTT
  TCCAAAAGCA CAGATGCACA CCCATATGTA AGTATATTAT TAAGGATACA AGAGGACATT
  TTAAAGCAAA ACCTTGTAGC ATGTGATGGC TGCTCTTTGA CTTCCTGTGT TGTTTTAATG
  TGTTAGTTCT TTGGTGAACA CCATGTTTGT GTTCCTCCTT CCACTCTGTA GGAAGTGTGC
  Y
  AGTAGTGGCC ATGATGACAC AGTACTCTCA CATGTCATAT TTCGTAGAAA TGCTATCAGC
  TTTCAGCTGC TCATGCTCGA TCTAGACATT GTTTTCAATT TTCCACGCCA CTTTTATTTT
  CTATGCAAGT TTTCTAGTAT TTTGTAGTCA AATCTATTAA TTGATTTTTT AAAAAATTGA
  CGTCTGCCTT TAATATGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8560139	WI_WGS_9_22985048	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6154642					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:22818333 () rs orientation: forward

Symbol	Name	Function Class
Rr383073	regulatory region 383073	within coordinates