rs6154971 SNP Detail

Summary

• ID
  rs6154971
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79039113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCCTCT GCCTCTGCCT
  CTGCCTCTGC CTCTGCCTCT GCCTCTGCCT CTGCCTCTGC CTCTGCCTCT GCCTCTGCCT
  CTGCCTCTGC CTCTGCCTCT GCCTCTGCCT CTGCCTCTGC CTCTGCCTCT GCCTCTGCCT
  CTGCCTCCTG AGTGCTGGGA TTAAAGTCGT GCACCACCAC TGCCCAGCTT TGTTTTTGCT
  W
  TGAGGTGCTG GGAATTGAGG GCCTTATGCA AGGCCAGCAC ACGACCATTT CATGACATGA
  TTTATGAGAG AGATCCCAGT CCCTTTTGCA GGGTTTTTGT GTTGTTGCTG TTTTATTTTA
  GTTTGGTTGA GACACAGTCT CACTATGTAT CACAGGCTGG CCTCCAATAG AAATCCTCTT
  GCCACAGCCT ATTAAATGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8560468	WI_WGS_12_73672564	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6154971					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79039113 () rs orientation: forward

Symbol	Name	Function Class
D12Mit4	DNA segment, Chr 12, Massachusetts Institute of Technology 4	1051 bp proximal
Tmem229b	transmembrane protein 229B	within coordinates