rs6155188 SNP Detail

Summary

• ID
  rs6155188
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15148564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAATACGT TCAAAGAAAT
  TGTTTTTGAA GGTAGCTGGG AGTAGCTGGA GGGGCATCAC AATGTCTAAG GCTTCCGTCA
  GCGCTCCCAG CACAAGGGAG AGAGAGTGCC TGCCAGTAAA TTGGGCAGCA GGGATGAGAC
  CGGAATCAAG TCCTACACTG CTCAATGGGA GACTCTCCAT TCCGGGCAGA AGCCCTAGGT
  K
  CTGGGAAGTC GAACTTTGGG GGCTCCTTAA AGCTTATAAT CAAAGCTGCA GGTCTGGGAC
  AGCTCTTTAC AAGTTGGGTG GCAGTCCTTT CTCTTGCATT TATTTGCCTA GGGTCCTCTG
  GGGAACAGCA GATAGGAGAT AGTTTGAGTG GAGGTCTGAT AGCAATGCCA GCAGCCAACC
  GCTGCTCCTG ACCCCTCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8560686	WI_WGS_4_14661484	WI	MOUSE	f	SNP			T	G
ss146047798	ENSMUSSNP3817180	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T			T
ss321047408	CHEV_4_15075711	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6155188					SNP	G	T	T	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15148564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	212 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	377 bp downstream
Tssr40969	transcription start site region 40969	397 bp downstream
Tssr40970	transcription start site region 40970	413 bp downstream
Tssr40971	transcription start site region 40971	447 bp downstream
Tssr40972	transcription start site region 40972	487 bp downstream
Tssr40973	transcription start site region 40973	1191 bp downstream