rs6155366 SNP Detail

Summary

• ID
  rs6155366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127030568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATAGCAT TTCCTCAGCC
  AGCCCAGACA GAAAACGCTC TTCTAGTTCC TCTCCTCCCC TGCAGAATCC TCTCCAAGTT
  GCTCAAGGAA CTTCATCAGG CTAATTCCTC TTTTCCCCCC AGTGCAGAGG GAGATCCTAG
  ATGCAGATAA AGACAGGAAG GAGAAAAAAA AAAAGGGCCT CACAGGATGA AGGTCGTACA
  Y
  GCCACCTCCC TCAGATTACA CTGACAGAAA TATCTCCTAA ACTCCTCGCT TTACGTTCTC
  GAATAGTTCA AGTCCCTGTT GTTGACAGAG ACCTTTCCTT GAGAGCCGGA AGTCTGTTAG
  GGATGCCAGC AAAGTGTTAG CAGTCCCGCA ATAACAAAGT TCTCATTGTC ACCTTTAAAC
  CCAGTGCCCG CAGAGCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8560864	WI_WGS_10_127844335	WI	MOUSE	f	SNP					C		T
ss61335344	NES16943348	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		C		C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6155366					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61335344	NES16943348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127030568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	432 bp proximal
Dtx3	deltex 3, E3 ubiquitin ligase	within coordinates
F420014N23Rik	RIKEN cDNA F420014N23 gene	550 bp upstream
Gm57007	predicted gene, 57007	within coordinates
Rr224404	regulatory region 224404	within coordinates
Tssr96170	transcription start site region 96170	541 bp upstream
Tssr99735	transcription start site region 99735	1539 bp upstream
Tssr99736	transcription start site region 99736	499 bp downstream
Tssr99737	transcription start site region 99737	1014 bp downstream