rs6155582 SNP Detail

Summary

• ID
  rs6155582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109481041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACTGAA GCTTGACTGA
  GGTGGTTTTG TTTGTTTGTT TGTTTGTTTG TTTTTCTTTT AAGTATCTAT CTGTAAACCA
  AAGTATTCTT TCTCTAAAAT AAAAACTAAG TATTACCAGT TAATGGGAAC TTGCTCACGT
  GGGATGCTGT GCTGTGTTAG GATTGCGTTT GCAGGAGCTA GTCTGCACAG TATCATGAAA
  Y
  CCTGTTTGGA TCTTAAAACG TGTTGAAAGC AAGCCTTGCA TCGCAGGATT GGACCTTGCA
  TATAAATTAG TGCAAGTCCT TGTTTTAAGG AGTTTTATGA GGCTGAGTTG ACATTGCTTA
  AGAAACAGTT GGAAAAGTTA AGCGTAACCT ACAGTCATTT AGGGGTATGA GTCACCTTTC
  TGACAAGCCA ATAAGGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8561080	WI_WGS_3_110072865	WI	MOUSE	f	SNP							C		T
ss46878840	NES10702914	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6155582					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878840	NES10702914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109481041 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	255 bp distal
Rr583432	regulatory region 583432	within coordinates
Rr583433	regulatory region 583433	193 bp proximal
Tssr31300	transcription start site region 31300	244 bp upstream
Tssr31301	transcription start site region 31301	276 bp upstream
Tssr31302	transcription start site region 31302	294 bp upstream
Vav3	vav 3 oncogene	Intron