rs6155583 SNP Detail

Summary

• ID
  rs6155583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:140092565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGTATTAA GCTTGGAGCA CATATTTAGA ATCTTAAGAC
  AGGGTTTGCC CACTCTGGCA TCTCCATGCT CTGTGCTGGT GATGTAAGGA GTTTCTGGAT
  R
  CATCCTTTCA CTGTGAAAGC CATTATTATC ACTGTGGCTT TTAGCAAGAG ACCCTCATAA
  TCTGGCCTAC TGATGCCACC AGACTCTCTG TTTGAGATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8561081	WI_WGS_2_141283921	WI	MOUSE	f	SNP			G	A
ss45216877	mCV24492043	ABI	CRAMUS_MOUSE	f	SNP	G	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6155583					SNP	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140092565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566094	regulatory region 566094			703 bp distal
Sel1l2	sel-1 suppressor of lin-12-like 2 (C. elegans)			Intron
				Noncoding-Transcript-Variant