rs6155602 SNP Detail

Summary

• ID
  rs6155602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:140092574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTTGGAGC ACATATTTAG AATCTTAAGA CAGGGTTTGC
  CCACTCTGGC ATCTCCATGC TCTGTGCTGG TGATGTAAGG AGTTTCTGGA TGCATCCTTT
  Y
  ACTGTGAAAG CCATTATTAT CACTGTGGCT TTTAGCAAGA GACCCTCATA ATCTGGCCTA
  CTGATGCCAC CAGACTCTCT GTTTGAGATT CCAGCTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8561100	WI_WGS_2_141283930	WI	MOUSE	f	SNP			C	T
ss45291401	mCV24492050	ABI	CRAMUS_MOUSE	f	SNP	C	C	C		T
ss320528562	CHEV_2_140076390	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6155602					SNP	C	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140092574 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566094	regulatory region 566094			712 bp distal
Sel1l2	sel-1 suppressor of lin-12-like 2 (C. elegans)			Intron
				Noncoding-Transcript-Variant