rs6155610 SNP Detail

Summary

• ID
  rs6155610
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15148582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTTTTG AAGGTAGCTG
  GGAGTAGCTG GAGGGGCATC ACAATGTCTA AGGCTTCCGT CAGCGCTCCC AGCACAAGGG
  AGAGAGAGTG CCTGCCAGTA AATTGGGCAG CAGGGATGAG ACCGGAATCA AGTCCTACAC
  TGCTCAATGG GAGACTCTCC ATTCCGGGCA GAAGCCCTAG GTTCTGGGAA GTCGAACTTT
  K
  GGGGCTCCTT AAAGCTTATA ATCAAAGCTG CAGGTCTGGG ACAGCTCTTT ACAAGTTGGG
  TGGCAGTCCT TTCTCTTGCA TTTATTTGCC TAGGGTCCTC TGGGGAACAG CAGATAGGAG
  ATAGTTTGAG TGGAGGTCTG ATAGCAATGC CAGCAGCCAA CCGCTGCTCC TGACCCCTCC
  CCTCTCACAG AGGTGATGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8561108	WI_WGS_4_14661502	WI	MOUSE	f	SNP						G		T
ss37889740	NES08640074	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G		G		G	G	G		G	G	G	T		G
ss146047803	ENSMUSSNP1433258	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
ss321047409	CHEV_4_15075729	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6155610					SNP	T	T	G	G	G	G	G	T	G	G	G	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889740	NES08640074	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15148582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	194 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	359 bp downstream
Tssr40969	transcription start site region 40969	379 bp downstream
Tssr40970	transcription start site region 40970	395 bp downstream
Tssr40971	transcription start site region 40971	429 bp downstream
Tssr40972	transcription start site region 40972	469 bp downstream
Tssr40973	transcription start site region 40973	1173 bp downstream