rs6155918 SNP Detail

Summary

• ID
  rs6155918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127030655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTCATC AGGCTAATTC
  CTCTTTTCCC CCCAGTGCAG AGGGAGATCC TAGATGCAGA TAAAGACAGG AAGGAGAAAA
  AAAAAAAGGG CCTCACAGGA TGAAGGTCGT ACACGCCACC TCCCTCAGAT TACACTGACA
  GAAATATCTC CTAAACTCCT CGCTTTACGT TCTCGAATAG TTCAAGTCCC TGTTGTTGAC
  R
  GAGACCTTTC CTTGAGAGCC GGAAGTCTGT TAGGGATGCC AGCAAAGTGT TAGCAGTCCC
  GCAATAACAA AGTTCTCATT GTCACCTTTA AACCCAGTGC CCGCAGAGCT GCTGTCAGCT
  GCAAATCAAG CAGGAGCTTG GCTAGAGGGA CCCGAGGTTT TCCCCTGAGC CCTGTCACAG
  CCCAGCTCCA GGGCCTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8561417	WI_WGS_10_127844422	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6155918					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127030655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	345 bp proximal
Dtx3	deltex 3, E3 ubiquitin ligase	within coordinates
F420014N23Rik	RIKEN cDNA F420014N23 gene	463 bp upstream
Gm57007	predicted gene, 57007	within coordinates
Rr224404	regulatory region 224404	within coordinates
Tssr96170	transcription start site region 96170	454 bp upstream
Tssr99735	transcription start site region 99735	1626 bp upstream
Tssr99736	transcription start site region 99736	412 bp downstream
Tssr99737	transcription start site region 99737	927 bp downstream